PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma178g00480.1 | ||||||||
Common Name | ZOSMA_178G00480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 248aa MW: 29158.3 Da PI: 9.3997 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.7 | 7.4e-30 | 145 | 200 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+ ++ LGG+++AtPk+i+++++v++Lt+++vkSHLQkYR++ Zosma178g00480.1 145 KERRCWSPELHRRFVHTLQILGGPHVATPKQIRQILQVDDLTNDEVKSHLQKYRMH 200 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.076 | 142 | 202 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 142 | 201 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.68E-15 | 142 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 145 | 200 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSLQKQQEYV DALEKERDKI AIFRRDLPLS LDLLDRVIKN YRGEICKVAA AMPILVVDEE 60 EERCVDDSTP ILKEFIPLKP TVLKKLNEDD DDDEGDRLEK MSRCSWLKSA QLWNNDKKTL 120 SSPNKNENKF LLKHHHRDQH HQQRKERRCW SPELHRRFVH TLQILGGPHV ATPKQIRQIL 180 QVDDLTNDEV KSHLQKYRMH AKWSNRETKI NGDPKSVKPV VMWEPRGLTY SNQLLGHRIR 240 STAPFQH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PRU1 | 0.0 | A0A0K9PRU1_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 1e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma178g00480.1 |