PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G13300.1 | ||||||||
Common Name | HRS1, T6J4.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 344aa MW: 39057.2 Da PI: 6.4499 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.3e-31 | 181 | 236 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ AT1G13300.1 181 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLH 236 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.113 | 178 | 238 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.19E-16 | 180 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-27 | 180 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-28 | 181 | 236 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-6 | 183 | 234 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:1901699 | Biological Process | cellular response to nitrogen compound | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000256 | anatomy | root hair cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0020100 | anatomy | hypocotyl |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT 60 TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE EFDDEHGNHD PDNDSEDKNT 120 KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR 180 KQRRCWSSQL HRRFLNALQH LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP 240 RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW 300 PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20366 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 259365_at | 0.0 | ||||
Expression Atlas | AT1G13300 | - | ||||
AtGenExpress | AT1G13300 | - | ||||
ATTED-II | AT1G13300 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the root hair region and root hair cells. {ECO:0000269|PubMed:19341407}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Overexpression confers hypersensitivity to low phosphate-elicited inhibition of primary root growth. | |||||
UniProt | Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00140 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G13300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G13300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367336 | 0.0 | AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. | |||
GenBank | AY124865 | 0.0 | AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_563926.1 | 0.0 | myb-like transcription factor family protein | ||||
Swissprot | Q9FX67 | 0.0 | HRS1_ARATH; Transcription factor HRS1 | ||||
TrEMBL | A0A178W2E4 | 0.0 | A0A178W2E4_ARATH; HRS1 | ||||
STRING | AT1G13300.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13508 | 17 | 28 | Representative plant | OGRP5415 | 12 | 21 |
Link Out ? help Back to Top | |
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Phytozome | AT1G13300.1 |
Entrez Gene | 837890 |
iHOP | AT1G13300 |
wikigenes | AT1G13300 |