PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma175g00250.1
Common NameZOSMA_175G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 829aa    MW: 89339.8 Da    PI: 4.9981
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma175g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08198242144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                       r+ W++eEd  l++av++ G g+W  I ++     Rt+ q+  rw
  Zosma175g00250.1 198 RKLWSKEEDMELIEAVQKCGEGNWQNILKEEFkHDRTASQLSQRW 242
                       567*************************98777889999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-14192251IPR009057Homeodomain-like
PROSITE profilePS5129413.247193250IPR017930Myb domain
SuperFamilySSF466891.52E-12196247IPR009057Homeodomain-like
SMARTSM007171.4E-8197248IPR001005SANT/Myb domain
PfamPF002492.0E-7198242IPR001005SANT/Myb domain
CDDcd116608.12E-14201247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MNEKKKRKGT ITEEDVSLIL HKYSAATILA LLQEVNQFAS SKINWDALVK MTSTGISCPR  60
EYQMLWRHIA YRHPLSDNTE HDSKPLDDDS DLEFELEPFP AVSSEASSEA AACVKVLMSS  120
CSPKDSSTTN RPTVEAPLTI NIPNVQSSDK QLALTSTRSL HITIPVSVQK QPLPSITPAE  180
GLDGGGSTNL KQPAKKKRKL WSKEEDMELI EAVQKCGEGN WQNILKEEFK HDRTASQLSQ  240
RWSILRKNYG KSNVGSNSNS NHSTLTDSLL GARQALSLAL NMLTIGSLSA IRSGNMQSNT  300
SVGFGLQHTS SEASHALPQK VPSPSQPSQV TSQRAMAIPN KLTTIPAKPR CLVKPSTGLN  360
SLIQKAAFAA GGRIANPSTA ASLFKAAQSK NAVRIRPRGA PPISQVGVTK PSSSATISVP  420
HSNASQNCLP PIILPSTGIG SQQSSCHFSK LAGQTAPKTV QISRPLPPPL HGELRLTIPV  480
NDTALNTDAN TSRTVLSSDV SSALFKEEIQ DSEKQVIDST SGQGHVTPIE TTVNNFIGGD  540
RNTMVNSDVE NKKFRVTDQD HVSSPENMDI DDDQITFVNM DAEDGRNIIV DSVARPSSEV  600
DVEHGIMANL VDVGMISKSP PLVVTQNNII QLKSDGPIQK EEVYNSGSIN NQNSTTIENV  660
DTESLVRAND ENMVISDVED PKASAIDSCI DQEIVTSPEN MDIDNDQIAV NLNAEDADYG  720
IMVNLVDVGM PSKSTPLVVT NNDIIELKSD GPIEKVVHNS GATNNKNSTT VENVDMEKKE  780
TSVSVNEAVI ADGNFSIAND QDKEKLINEK PTDGNNLVTS EQSNTPKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189198LKQPAKKKRK
2194199KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PRU20.0A0A0K9PRU2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-59MYB_related family protein