PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00920.1
Common NameZOSMA_16G00920
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 292aa    MW: 32249.5 Da    PI: 8.1445
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.3e-311972255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prl+Wtp+LH++F+++ve+LGG++ AtPk +l++m+vkgLt++hvkSHLQ+YR+
  Zosma16g00920.1 19 PRLKWTPDLHRAFLHVVERLGGQHMATPKLVLQMMDVKGLTISHVKSHLQMYRS 72
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-281573IPR009057Homeodomain-like
PROSITE profilePS5129412.681575IPR017930Myb domain
SuperFamilySSF466892.51E-141773IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-221973IPR006447Myb domain, plants
PfamPF002491.2E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGSCGRNGAV RQYLRSKVPR LKWTPDLHRA FLHVVERLGG QHMATPKLVL QMMDVKGLTI  60
SHVKSHLQMY RSKGNETMNR KDFKPTSPES SSLCVHEDRS NKATPLLIHT NLMPFLPTET  120
TERSNYITRM ETTPVQTNLQ CRRELFDNFK YSSSCLDTAA AVSASAGGDG GGYTYMQPPM  180
EEGLQWQKDA LQTKLLSKDE SCYLSSKAVE SGPFKDVMIL AKRMEFNDED VDCSLKLSPP  240
SGQGMIHFQS LSSSSSSSSS EKSEVLNLRE GHSSGYSDGG HSLNLTLSIS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-162072355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-162072355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-162072355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-162072355Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-162072456Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PV900.0A0A0K9PV90_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-33G2-like family protein