PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma16g00430.1

Common Name

ZOSMA_16G00430

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 838aa MW: 92791.2 Da PI: 7.9395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma16g00430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	138	159	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n+krHir H Zosma16g00430.1 138 KCEKCSQEFFSPINYKRHIRIH 159 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.099	137	159	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MKNEQKPTKS EGHDFVDSFF SQSARKELFL SLSCNRDNPI QLIQLLNALN QQGSYKSSNS 60 SNIENCSGRI FLDRRGDPNL LASDINGTKK TINSVKQNDT PKALNNALCH VAVTVNNETE 120 KCLSGWPMLS IPKITMQKCE KCSQEFFSPI NYKRHIRIHR RSLNINKFSS KNRENLCAFI 180 DKLSLDEQKE LFSLNNVSFK EVTGMAIVDE MISLFRKQWF NSLPPVFVNA GADLLDILQS 240 HPSKFPISSQ MILRTLDDAS EKTFFCTGNV DSLQKVLFDG DIEMTVLDVK NVISCISFLL 300 EKKLDKALLD DKDAEALRCQ KLLEEEETAA QKRQTDILER KKQKKSRQKK QKAKKTCVEN 360 EGEIQGVSSL ITVDQLSCSK LPSLSLSDGS VEIPNELLPD TESVSTSGEK LDKGDNKSVP 420 SIIILEKKKQ KNSRQKKQRT RKPWVRNKCY VKGALSAITV DQLSCSKLSS LSHSDGSVEI 480 SNELLLDNES ISISGESLDK GEIKGVSSII TRDQLSCSKL SRSSLLDGSV AIPNDLFPNN 540 VSINTSGESL DIGEIKDISS DITGDQLSCS KLSSLSLLDG IPSELLPNTE SINTLSESLE 600 KGVSSVITVD QLSYAKLASS SLLNGSVRIP YGSISTLGET VDSCGLQSEH CDLAIDDDHR 660 QCEIDIKRDT SSSQIISKSN NILNDFRAIQ TTYLPKRPVK NNKGAASTNK HMVWTKKPKP 720 EMEGIDINEE TTKQESYQTG SSEILIGSIT VLIPTHNALP NNIAIEKKGK QNAIPNGRRH 780 TIKQKRRLNP VPAEKNPFNH TFSPQLSSIQ MAEDFFIQRW KAALASNDVT IFSSSTS*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MKNEQKPTKS EGHDFVDSFF SQSARKELFL SLSCNRDNPI QLIQLLNALN QQGSYKSSNS  60
SNIENCSGRI FLDRRGDPNL LASDINGTKK TINSVKQNDT PKALNNALCH VAVTVNNETE  120
KCLSGWPMLS IPKITMQKCE KCSQEFFSPI NYKRHIRIHR RSLNINKFSS KNRENLCAFI  180
DKLSLDEQKE LFSLNNVSFK EVTGMAIVDE MISLFRKQWF NSLPPVFVNA GADLLDILQS  240
HPSKFPISSQ MILRTLDDAS EKTFFCTGNV DSLQKVLFDG DIEMTVLDVK NVISCISFLL  300
EKKLDKALLD DKDAEALRCQ KLLEEEETAA QKRQTDILER KKQKKSRQKK QKAKKTCVEN  360
EGEIQGVSSL ITVDQLSCSK LPSLSLSDGS VEIPNELLPD TESVSTSGEK LDKGDNKSVP  420
SIIILEKKKQ KNSRQKKQRT RKPWVRNKCY VKGALSAITV DQLSCSKLSS LSHSDGSVEI  480
SNELLLDNES ISISGESLDK GEIKGVSSII TRDQLSCSKL SRSSLLDGSV AIPNDLFPNN  540
VSINTSGESL DIGEIKDISS DITGDQLSCS KLSSLSLLDG IPSELLPNTE SINTLSESLE  600
KGVSSVITVD QLSYAKLASS SLLNGSVRIP YGSISTLGET VDSCGLQSEH CDLAIDDDHR  660
QCEIDIKRDT SSSQIISKSN NILNDFRAIQ TTYLPKRPVK NNKGAASTNK HMVWTKKPKP  720
EMEGIDINEE TTKQESYQTG SSEILIGSIT VLIPTHNALP NNIAIEKKGK QNAIPNGRRH  780
TIKQKRRLNP VPAEKNPFNH TFSPQLSSIQ MAEDFFIQRW KAALASNDVT IFSSSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PSY9	0.0	A0A0K9PSY9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-52	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma16g00430.1