PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma169g00300.1
Common NameZOSMA_169G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 438aa    MW: 48691.5 Da    PI: 6.9337
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma169g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.5e-1582141155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Zosma169g00300.1  82 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 141
                       57*******************666664477446**********99*************98 PP
2AP251.72.2e-16184235155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Zosma169g00300.1 184 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 235
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1282141IPR001471AP2/ERF domain
CDDcd000181.34E-2082151No hitNo description
SuperFamilySSF541717.19E-1782151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-1583150IPR001471AP2/ERF domain
PROSITE profilePS5103218.67683149IPR001471AP2/ERF domain
SMARTSM003801.3E-2783155IPR001471AP2/ERF domain
PRINTSPR003672.0E-68495IPR001471AP2/ERF domain
PfamPF008472.8E-11184235IPR001471AP2/ERF domain
CDDcd000181.63E-24184243No hitNo description
SuperFamilySSF541719.81E-18184244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-17185243IPR001471AP2/ERF domain
SMARTSM003801.1E-32185249IPR001471AP2/ERF domain
PROSITE profilePS5103218.834185243IPR001471AP2/ERF domain
PRINTSPR003672.0E-6225245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVGHPKLENF LGGCGEPMGT STSTAEHHDV GEVYDSDLKT IASGFLSGYP SRDPQESECS  60
KAVVLVEVEP KKAVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG  120
GYDKEDKAAR AYDLAALKYW GPTITTNFPV SNYEKELDDM KNMTRQEFVA SLRRKSSGFS  180
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE EAAEAYDIAA IKFRGLNAVT  240
NFDMTRYDVK TIASTILPIG GMSGVTTRTN SSKNASSPCS SSSDHYPNTN NTTDLDLTTA  300
PPSIYGFSLN HQQKQQQQQH DYWSLLALHQ QQQQHFNVFS GGAVNMDFSG EENGGGYIWS  360
GGDGTCEMYN QHVQTPPQQQ HQQQHQHQHQ QMEGDNHTLS LVNGYDENGG VSWITSRPSP  420
SSTSNMGLYQ TAIFGMD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001290493.11e-160AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-136AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0K9PT660.0A0A0K9PT66_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008803593.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-133AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]