PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma160g00270.1
Common NameZOSMA_160G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 365aa    MW: 39507.5 Da    PI: 9.9509
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma160g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix392.2e-1247144186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk.......rtsessstcpy 81 
                       +W++  + +Li+a  ++  ++ rg+l++++W+ev++++       +  +r+ +qCk++++ ++k++k +k++ ++       ++   +s++p+
  Zosma160g00270.1  47 CWSEGATSVLIDAWGDRYLEVTRGNLRQKDWQEVADAVnsrktVVKRPHRTDVQCKNRIDTIKKKFKSEKARIEGdggggggGSGMGESQWPF 139
                       7*************************************664443334489*******************987543111111134455667777 PP

          trihelix  82 fdqle 86 
                       +++le
  Zosma160g00270.1 140 YTRLE 144
                       77775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-2446145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVRSRAPVPG STGPPGPESA GGGGGGGGGG GGKPPPPNPA MPYRDDCWSE GATSVLIDAW  60
GDRYLEVTRG NLRQKDWQEV ADAVNSRKTV VKRPHRTDVQ CKNRIDTIKK KFKSEKARIE  120
GDGGGGGGGS GMGESQWPFY TRLETLIGST ATGLTSNTAS TSARKKKKKK VKNSPNSPLH  180
LLPAPSPPAL PPPPPTRKRS VATLLADSSL KWGNYSAAAA AAAAARDDEP DPDSESSKSS  240
GFAVHPKRRV KKNVETRAPV KTMGFGHRDD EHEEEEEGVK ELANAITRFG EIYERVEIAK  300
QKQLIELEKQ RMEFNKELEF QKMQMFIDSQ VQISRIKRDS ENGGEHSEIS GLEMLNLQLI  360
KMIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169RKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LJG86e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0K9PUJ00.0A0A0K9PUJ0_ZOSMR; Putative Transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-34sequence-specific DNA binding transcription factors