PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma159g00100.1
Common NameZOSMA_159G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 379aa    MW: 43177.9 Da    PI: 6.7323
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma159g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94.1e-27107159356
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       +++WtpeLH+rFveave+L G +kA+P++ile+m++++Lt+++++SHLQkYR++
  Zosma159g00100.1 107 KVHWTPELHRRFVEAVEEL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 159
                       899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.103102161IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-25104162IPR009057Homeodomain-like
SuperFamilySSF466896.81E-18106162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-26106159IPR006447Myb domain, plants
PfamPF002499.9E-8108157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLAISTQENY FLEDVDFDDL FVGFDVAGDD DNDDDALAPV LEKNSSSAPD VSEKVEEEDM  60
SETGDIIHLQ NGDAKGSDQT VPEAEVETET AADLTPNNSQ KKRKLKKVHW TPELHRRFVE  120
AVEELGVDKA VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHMLKRDAEA VTWHHRRQMY  180
GGRGPSARYK REMPVSASCL VPTIGFPSPP LPPLIRHFRP LHVWGHPTVD HAMMHMWPHN  240
LAQSHQWALP HHATMPDPSS CWHYPINPNS HRFPALSTLQ PLYIPPYHRL HHYHNHQLYR  300
PDLNRLPLAP RKRLKSEEFH PSKESIDATI GDVLSNPWLP LPLGLKPPSV ESILLQLKKE  360
DIANSIQFRS IVHQTSVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14107157757ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315PRKRLKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ5Z5I46e-56GLK1_ORYSJ; Probable transcription factor GLK1
SwissprotQ9SIV33e-56GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A0K9PV230.0A0A0K9PV23_ZOSMR; Response regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-59GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]
  3. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  4. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  5. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  6. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  7. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]