PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma155g00090.1
Common NameZOSMA_155G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 312aa    MW: 35113.1 Da    PI: 6.6188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma155g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.8e-24119179259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgy W KYGqK + g+++ rsYY+C+++   gCp++k+v+rs+++p++++itY g+H ++
  Zosma155g00090.1 119 DDGYVWNKYGQKIILGARHQRSYYKCSQKtdqGCPATKQVQRSNDNPSMFVITYIGKHCCQ 179
                       8**************************988889*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-24110180IPR003657WRKY domain
PROSITE profilePS5081122.504113176IPR003657WRKY domain
SuperFamilySSF1182902.75E-23116180IPR003657WRKY domain
SMARTSM007743.6E-35118180IPR003657WRKY domain
PfamPF031064.6E-24119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDSSHLQCTR PVPFFNEIRR GRDLLLKLRD LTDKVSPSNA SAATGTVCDG DLVNEVLGSL  60
TGTLSSMLTS TVKPSDETNP SCRKKRGRTW TDTKSLTGGK RSRRYSQYET KVTNKPDEDD  120
GYVWNKYGQK IILGARHQRS YYKCSQKTDQ GCPATKQVQR SNDNPSMFVI TYIGKHCCQQ  180
TIYLSADDDE SSTVHDHSSN RPFSITFGKS IVNSNYHPLP PMSESAHRPF PFTKKLPLQL  240
KKPTVPQNNA IDVAVPEVIC PTDLMFENPE SSWENDSNYS LDKNLFDDVD DFDFKSFWAE  300
NEDLELLLNS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-16111176774Disease resistance protein RRS1
5w3x_D3e-16111176774Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PVI40.0A0A0K9PVI4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-20WRKY DNA-binding protein 55