PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma14g01070.1

Common Name

ZOSMA_14G01070

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Nin-like

Protein Properties

Length: 367aa MW: 41560.8 Da PI: 6.7347

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma14g01070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	6.7e-27	239	288	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + i++ed+skyF+++i+dAAk ++v+lTvLK++CR++GI+RWPhRk+ks+ Zosma14g01070.1 239 SMIRFEDISKYFYMTITDAAKMMNVGLTVLKKRCRELGISRWPHRKMKSM 288 5799********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	222	308	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-22	241	287	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNLKSLLEFD MSVPNLLHNQ YHHQYLQNQN PQALEWNIAY MGKPHDHHQP VPLLKEEAHI 60 AAVDHLASSS SSSSQFFNLM SLNNSAVVPV DQFLPQPDLM MNNLSIFPNV SAPNNHCHQY 120 HHHHQGYYNY NGMDVVENHE LVDLQGQIPV FDDDDNVYLE YFNFNSSPLD QGGVLGAESI 180 DHDPIIFLEN GNPISGGELL LAGEGGNGDG SIASIGSSGS AASDNLGFNN KPIRLSKSSM 240 IRFEDISKYF YMTITDAAKM MNVGLTVLKK RCRELGISRW PHRKMKSMKS LIHNVQELGK 300 TAPAEDIQRE IRTLEEHKRL MEQRPELQMT DRTKKLRQAC FKANYKRRRA RQFSPYIDGS 360 NNIIFN*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNLKSLLEFD MSVPNLLHNQ YHHQYLQNQN PQALEWNIAY MGKPHDHHQP VPLLKEEAHI  60
AAVDHLASSS SSSSQFFNLM SLNNSAVVPV DQFLPQPDLM MNNLSIFPNV SAPNNHCHQY  120
HHHHQGYYNY NGMDVVENHE LVDLQGQIPV FDDDDNVYLE YFNFNSSPLD QGGVLGAESI  180
DHDPIIFLEN GNPISGGELL LAGEGGNGDG SIASIGSSGS AASDNLGFNN KPIRLSKSSM  240
IRFEDISKYF YMTITDAAKM MNVGLTVLKK RCRELGISRW PHRKMKSMKS LIHNVQELGK  300
TAPAEDIQRE IRTLEEHKRL MEQRPELQMT DRTKKLRQAC FKANYKRRRA RQFSPYIDGS  360
NNIIFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PWD4	0.0	A0A0K9PWD4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Zosma14g01070.1