PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma149g00180.1
Common NameZOSMA_149G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 337aa    MW: 38018.9 Da    PI: 7.115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma149g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-1762109148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Zosma149g00180.1  62 KGPWTPEEDIILVTYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 109
                       79******************************99************97 PP
2Myb_DNA-binding51.22.9e-16115160148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T  E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Zosma149g00180.1 115 RGNFTDHEEKLIVHLQTLLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 160
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2353112IPR009057Homeodomain-like
PROSITE profilePS5129425.21657113IPR017930Myb domain
SuperFamilySSF466899.73E-3059156IPR009057Homeodomain-like
SMARTSM007171.9E-1461111IPR001005SANT/Myb domain
PfamPF002495.7E-1662109IPR001005SANT/Myb domain
CDDcd001675.73E-1164109No hitNo description
Gene3DG3DSA:1.10.10.608.5E-24113165IPR009057Homeodomain-like
SMARTSM007174.7E-15114162IPR001005SANT/Myb domain
PROSITE profilePS5129419.103114164IPR017930Myb domain
PfamPF002491.8E-13115160IPR001005SANT/Myb domain
CDDcd001673.44E-10117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSLEEYSR PSLLLFCIYR SVIPCAFFHS SLHPFLSQSP RVEEKRRDMG RPPCCEKIDV  60
KKGPWTPEED IILVTYIQEH GPGNWRSVPT NTGLLRCSKS CRLRWTNYLR PGIKRGNFTD  120
HEEKLIVHLQ TLLGNRWAAI ASYLPERTDN DIKNYWNTHL KKKLKKVEIG CSDSINVAKF  180
SKGQWERRLQ TDIGMAKKAL SDALSFDPAQ DNNINQQKQR PTILSPLSSS SSSAVYASSA  240
ENISRLLKNW MQKPLSSNNT VSVNTTANSS SCEVKPDSLQ EGILEFDSSP SATTEISDAS  300
FFQEETPLSM LETWLFDESF CPQVDISSIE DTHGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-255916424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332081.11e-115myb-related protein 306-like
SwissprotQ9SN781e-104MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A0K9PWJ80.0A0A0K9PWJ8_ZOSMR; Myb domain protein 94
STRINGGorai.008G192900.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-98myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]