PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma148g00340.1
Common NameZOSMA_148G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 467aa    MW: 50725.9 Da    PI: 6.5351
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma148g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27189242256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        +++WtpeLH+rFveav+qL G ekA+P++ile+m++++Lt+++++SHLQkYR++
  Zosma148g00340.1 189 IKVDWTPELHRRFVEAVDQL-GVEKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 242
                       5899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.779185244IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-26186245IPR009057Homeodomain-like
SuperFamilySSF466892.51E-17187245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25188242IPR006447Myb domain, plants
PfamPF002498.9E-7191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLAISPLETA GCNLDGRGVG DAAAEDYVAG GGLVGGGAGN GGGEHDQHHQ HQHQHDSFAD  60
AFSSGNLQLE DINFDDLFVG FDDGTGDILP DLELDPDELL GVFNTSFEED MEMGSLGEVK  120
SGGTESSGGV DGEKEEGDSF KTTSDGGDQT VPETTGEDVK VSESVAAVDE RNRKVRKSTA  180
GGMQKKRKIK VDWTPELHRR FVEAVDQLGV EKAVPSRILE IMGIDCLTRH NIASHLQKYR  240
SHRKHVLARE AEAASWTHRR KIYSPTTSTV GHVVPVLKRE TITPWMGAPA TMGFPTTPLR  300
TQPPPPASPS PSIQSFRPLH VWGHPTVEHH MIHMWPKHVV PSHPPHHHWA PPPHDPSAYW  360
LPPHYQPKTP HYPHHPPLPP QRFSSPSPIA TGIPPFSPPP PAKLHHQFQP TKEIIDKVIG  420
DVLTKPWLPL ALGLKPPSVD SVLVALQREG ITKIPSHPSS SSSLCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17186246363ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260326.11e-100PREDICTED: probable transcription factor GLK1
TrEMBLA0A0K9PZ410.0A0A0K9PZ41_ZOSMR; Response regulator
STRINGXP_010260326.11e-99(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-59GBF's pro-rich region-interacting factor 1