PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma148g00260.1
Common NameZOSMA_148G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 589aa    MW: 65545.5 Da    PI: 6.5158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma148g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13443489455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zosma148g00260.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 489
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4658247IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-19442505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-15442493No hitNo description
Gene3DG3DSA:4.10.280.101.4E-18443501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MKTEMGVSVV VDGGGRIWTE EDRAMAILVL GQHAFDYIAT NRVSSECLVA AVTDHGNLQN  60
RLMELVDGPN PSGVSWNYAI FWQISRYKSG ETVLGWGDGY CREPREGEES DSDASALEND  120
WVHKQNMKKR VLQKLHMDFG MADEENNTLK LDRVTDTEMF FLASMYFSFP RGEGAPGKVL  180
TSGKSHIWFS DVSSKLGEYE YCLRGFLARS AGIRTVVLVR SENGIFELGR TSVVQEKADI  240
VQGIRSVVSP HERNNLDDDN DLQLGLGGST NMWKPEFPKI SVTKEEHNAW DLQSHSGNVG  300
NIRTAFSPFR RGAPPALGWN QAHNPIKSFP IVQPKFCSNN NSGISRNNAE ASNRPFAHHG  360
NSNSSNGLCD DHKLLSQKPT VQIPKQIDFT GALISGVPPV LSEHMDVELL NDDRPAVSTV  420
VTDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AISYITELQK KLKEMESEKD VQQNSPDVDV QMGNNEVIVH VSTPLETHPV STVINVFKET  540
QVDVVDSKFS ASNNTVFHTF VVKTQSGSEQ MTKDKLIAAL SHEIHHSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29437499264Transcription factor MYC2
5gnj_B4e-29437499264Transcription factor MYC2
5gnj_E4e-29437499264Transcription factor MYC2
5gnj_F4e-29437499264Transcription factor MYC2
5gnj_G4e-29437499264Transcription factor MYC2
5gnj_I4e-29437499264Transcription factor MYC2
5gnj_M4e-29437499264Transcription factor MYC2
5gnj_N4e-29437499264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424432RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242396.11e-178PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.11e-178PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.11e-178PREDICTED: transcription factor bHLH13-like
RefseqXP_019051449.11e-178PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-171MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0K9PZ130.0A0A0K9PZ13_ZOSMR; Basic helix-loop-helix (BHLH) family transcription factor
STRINGXP_010242395.11e-178(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-77bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]