PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma137g00220.1
Common NameZOSMA_137G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 384aa    MW: 43522.7 Da    PI: 9.6444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma137g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-153983147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rWT++E++++++a+ ++G   W+ I++++g ++t  q++s+ qky
  Zosma137g00220.1 39 RERWTADEHQKFIEAISLYGRA-WRCISEYIG-TKTTIQIRSHAQKY 83
                      78******************88.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-153488IPR009057Homeodomain-like
PROSITE profilePS5129419.2343488IPR017930Myb domain
TIGRFAMsTIGR015571.6E-153786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-83879IPR009057Homeodomain-like
SMARTSM007176.6E-113886IPR001005SANT/Myb domain
PfamPF002491.2E-123983IPR001005SANT/Myb domain
CDDcd001672.73E-84184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCSDPFIMPQ KQLPVETRLS SETENILKVR KPYIITKQRE RWTADEHQKF IEAISLYGRA  60
WRCISEYIGT KTTIQIRSHA QKYFSKIANK SSDSNVDSTV LVEIPPPRQK RKPNHPYPRK  120
FGNASDLKSH VLKKNLEKTT SDQESKTPKS VLSEFSSDFI GSSVSDIQKH KNALSDTCSG  180
VLQPSLAEEN GCTSSQSRDA VEESNPTSRK RRIQLFGTTI YTTEEDSVRG SKTKDEQIPT  240
PSEKGNVTPR VSDGNSPKDS WNPMLYYCMP PQQQDALQFH QNIVPLMPFY GGGFQHHPPA  300
SYQKYDASNE ERSHNKEIQE GSTSSFSYAS PMQTEIKVNH HNSMECHLAQ GKQRLFSSQS  360
QKSISNRQQR LKGFVPYKRP NIS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q0H60.0A0A0K9Q0H6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-37MYB_related family protein