PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma133g00030.1
Common NameZOSMA_133G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 439aa    MW: 47419.5 Da    PI: 8.025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma133g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09121143426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C+ff+++  Ck+Gd+CkF+H+
  Zosma133g00030.1 121 KICNFFYKGNGCKFGDNCKFMHS 143
                       68******99************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1972955IPR000571Zinc finger, CCCH-type
SMARTSM003560.193054IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258117145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6119144IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044119144IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7121143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6121143IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.77E-43148200IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.1E-41149436IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.0E-6149188IPR001680WD40 repeat
PfamPF004005.5E-6153188IPR001680WD40 repeat
PROSITE profilePS5008214.652156197IPR001680WD40 repeat
PROSITE profilePS5029420.777156358IPR017986WD40-repeat-containing domain
PRINTSPR003201.0E-7175189IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780175189IPR019775WD40 repeat, conserved site
SMARTSM00320350228265IPR001680WD40 repeat
SuperFamilySSF509786.77E-43238437IPR017986WD40-repeat-containing domain
SMARTSM003203.5E-4272309IPR001680WD40 repeat
PfamPF004000.0034276309IPR001680WD40 repeat
PROSITE profilePS5008212.246279318IPR001680WD40 repeat
PRINTSPR003201.0E-7296310IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780296310IPR019775WD40 repeat, conserved site
SMARTSM003204.6E-4312349IPR001680WD40 repeat
PfamPF004006.1E-4314348IPR001680WD40 repeat
PROSITE profilePS500828.604319348IPR001680WD40 repeat
PRINTSPR003201.0E-7336350IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9399436IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDVDFMERNG NKRGVNQRNV GGGRHYNGPG SGKVCAFWLE GRCNRNPCNF LHQKPDQIHN  60
REEVSQQKRA LVWRNPNGSG GSSNQNGPSK WGKTNNGVGG ASSGGRALIP TTSGSSGKRD  120
KICNFFYKGN GCKFGDNCKF MHSWFVGDDL ALLTPLEGHK KAITGIAFPL GSDKLYSGSN  180
DGSVKVWDCQ TGKCIGDFNL GSEVGCLVSE GAWLFVGVLN AVKAWNPLIG IDLTLDGPVG  240
IVYSLVIGND FLFAGVQNGN ILAWKVHVAT NNFEPAASLS GHQLSVVSLV VGGMRLYSGS  300
MDNTVRVWDL SNLQCIQTLT AHTSVVTSVL CWDQFLLSSS LDQTIKVWVA TENGSLEVTY  360
THKEEHGVLT LSGMLDTQGK PILLCSNNSN TSHIYDLPSF SERGKIFSKE EIRSIQTGPN  420
GLFFTGDGSG ELKVWKWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-221174358322Tako8
6g6n_A9e-221174358322Tako8
6g6n_B9e-221174358322Tako8
6g6n_C9e-221174358322Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398076.10.0PREDICTED: zinc finger CCCH domain-containing protein 17 isoform X1
SwissprotQ0DYP51e-175C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0K9PZ180.0A0A0K9PZ18_ZOSMR; Zinc finger CCCH domain-containing protein 17
STRINGGSMUA_Achr4P24880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-159zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]