PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma12g00320.1 | ||||||||
Common Name | ZOSMA_12G00320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 24899.9 Da PI: 7.9534 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.2 | 5e-43 | 18 | 146 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF+Ptdeelv++yL++kv + +l++ ++i+++++ +++PwdLp +++++ ++ y F + ky++g+r+nra+ sg+Wk+ gkdk + Zosma12g00320.1 18 LPPGFRFQPTDEELVTHYLRRKVLSCPLPA-SIIPDIQLSRFDPWDLPgGgAAASSGNDRYLFNLKMVKYRNGNRTNRAAGSGFWKTAGKDKLI 110 79****************************.89***************534566678899********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +s+ +++++g+kk +vfy+g+ +g++tdWvmhey Zosma12g00320.1 111 MSSrGDQVIGIKKFFVFYRGKPLHGQRTDWVMHEYY 146 *9967788***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-54 | 14 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.888 | 18 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-23 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGGDGGGSGG GGMTVIRLPP GFRFQPTDEE LVTHYLRRKV LSCPLPASII PDIQLSRFDP 60 WDLPGGGAAA SSGNDRYLFN LKMVKYRNGN RTNRAAGSGF WKTAGKDKLI MSSRGDQVIG 120 IKKFFVFYRG KPLHGQRTDW VMHEYYYLAP TDSSVANYTE DWVLCHTFQK KKPVARRNTE 180 YEPYDNPPPP SPPMSCVTDI SDGEYNSEDE ESCYHSNAAQ EKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 13 | 171 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 13 | 171 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 13 | 171 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 13 | 171 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 13 | 171 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 13 | 171 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 13 | 171 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028076724.1 | 5e-66 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 7e-60 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0K9PZ57 | 1e-167 | A0A0K9PZ57_ZOSMR; NAC domain protein | ||||
STRING | XP_010530936.1 | 8e-64 | (Tarenaya hassleriana) | ||||
STRING | GSMUA_Achr6P23840_001 | 6e-64 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-63 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Zosma12g00320.1 |
Publications ? help Back to Top | |||
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