PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma124g00100.1
Common NameZOSMA_124G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 387aa    MW: 41174.7 Da    PI: 6.2746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma124g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10301344755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  Zosma124g00100.1 301 IAAKNRRERISEKLKILQELVPNG-----TKVDMVTMLEKAISYVKFLQ 344
                       5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-12293352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13295356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-12300348No hitNo description
PfamPF000102.1E-7302344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MALARGRLMS LDSYYESLRG NGGSAAAEAM EVDSSSVGYF GLITQNKAME GEEVRDVDHH  60
HNHHPVAAES VLNYPLVNNP PSAVSDPSSS SSGSGGFVFG MMNSLSPVTI DSTGVGVGVG  120
VAVGDHHSNI LNFKTGAGGG SGGATGCNYQ SYLNSSMLSF DRHRQIEDFP VQFSDGLDQL  180
DHFNFKYGGD DHSSMRVTND QNFLETSSGN INGSTSVAGM TKDNGRIGSD EQFGWIYASD  240
TADGDGHQKS ELLDVDVRKR PHQMAAGGGD GKVPNKKHCS GGVVSKKAKN KAAATKDPQS  300
IAAKNRRERI SEKLKILQEL VPNGTKVDMV TMLEKAISYV KFLQLQVKVL ATDEFWPTQE  360
GKAPEVSQVK EAIDAILSSH SISTSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q2G50.0A0A0K9Q2G5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-50ROOT HAIR DEFECTIVE6