PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00080.1
Common NameZOSMA_122G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GeBP
Protein Properties Length: 453aa    MW: 50103.3 Da    PI: 4.7023
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.11e-36169267297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                       lfqrlw++eDei++LqG+ +f++++g+  ++++ d+  fy++++ +++++++k+qlveK+rrLKkK+++ v++++sgk+++f+++hdq +fe+
  Zosma122g00080.1 169 LFQRLWTDEDEIAILQGFYEFTSQRGTthHAHQhDTGPFYDQIRTKLQLDFNKNQLVEKLRRLKKKYRNVVNRMNSGKDFVFKSPHDQATFEI 261
                       79*************************7745556*********************************************************** PP

            DUF573  92 skkiWg 97 
                       s+kiW 
  Zosma122g00080.1 262 SRKIWS 267
                       *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-34170267IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MPSPAREEDR NPTIDDEVED DDSDSEMDMD EDSEDFEESL PVQPISNPGE DDEFPSSSTD  60
DENRTQNPNS NNNNHHVVFA DPPLNHESQT QHQNLPSLIP VSTSSSSHNG VGVATSMQQP  120
HHPSGSVALP VLDETLETPD AKRSIVDGTI MVSEERKSAS SVLEDSRRLF QRLWTDEDEI  180
AILQGFYEFT SQRGTTHHAH QHDTGPFYDQ IRTKLQLDFN KNQLVEKLRR LKKKYRNVVN  240
RMNSGKDFVF KSPHDQATFE ISRKIWSNSI ISRTGNYDQD EDDDANDAYH NETGVKVRKR  300
GKKRTHPDAS VTATGSEPVA VEVKVVPTLT TLCPPPVTPA ASTSLAPLFP NVVEETVRNC  360
FSPVFKEILN SGIGGSMVAG LGGGTSALAM GMMPLSLMGN SGNLLGSASK DGEVGEKWRK  420
QQILELKVYS KRLELVQEQI NVTLSELQSE HK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301305KKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241430.18e-88PREDICTED: probable transcription factor At3g04930
SwissprotF4K5T46e-69STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A0K9Q2S10.0A0A0K9Q2S1_ZOSMR; DNA-binding storekeeper protein-related transcriptional regulator
STRINGXP_010241430.13e-87(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-47DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]