PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma120g00310.1

Common Name

ZOSMA_120G00310

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 331aa MW: 38720.3 Da PI: 8.0146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma120g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84	1.9e-26	62	143	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i +r e+e++++ +k++k+lWe vs +mrergf+rsp+qCk+kw+nl +ryk ++++ ++ +++cp+fd+l+ Zosma120g00310.1 62 QWSQQETREFISIRAELERDFNVSKRNKTLWEVVSLRMRERGFRRSPEQCKCKWKNLINRYKGKETSDPNN----ERHCPFFDELH 143 7************************************************************99999984....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0022	59	121	IPR001005	SANT/Myb domain
CDD	cd12203	4.53E-25	61	126	No hit	No description
Pfam	PF13837	1.4E-22	61	145	No hit	No description
PROSITE profile	PS50090	7.608	63	119	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDELMQQEAL GRIMASLPIH TPVEASGSEM QVGSSFDGIG FSGVTMKKEG TVGVVGGERV 60 PQWSQQETRE FISIRAELER DFNVSKRNKT LWEVVSLRMR ERGFRRSPEQ CKCKWKNLIN 120 RYKGKETSDP NNERHCPFFD ELHAIFRERA NGMQRIHLES EPAAGAIAIP NQQQHLKKKG 180 KRISAVTRTK SSDEEENDSM SCYFDDNSEG DERVIERNRK KRAPKVNNTS SGGGGGNSVS 240 EVLHDWFEHQ RRMEVQWREA SERRAKERWV FEQDWRMSME KLERERFTSE QAWREREENR 300 RIREENRAEK RDFLLTSLLH KLLDQDEQNM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	8e-15	58	132	2	76	DNA binding protein GT-1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426675.1	5e-91	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A0K9Q392	0.0	A0A0K9Q392_ZOSMR; Zinc finger and SCAN domain-containing protein
STRING	GLYMA01G35370.2	1e-84	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-38	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma120g00310.1