PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma11g01270.1

Common Name

ZOSMA_11G01270

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C3H

Protein Properties

Length: 694aa MW: 78951.6 Da PI: 7.0673

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma11g01270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.4e-06	214	233	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C G+ C+F H Zosma11g01270.1 214 ICNFFRK-GWCIKGNACRFLH 233 5999999.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.544	209	236	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	212	234	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MSIRDSESIP NSSSEEDDYE DVEEIEVYEE GFSDTEDDRE EKKGKDDAGY SDGEVERRKG 60 IPNGDDGFDG IKNDFISSKP ELQTGHNSVS DRKEIDQNHQ TTVISEKHTI SLDGGRPKPL 120 AGENADSFNI ELVHPSAYVN HLGGENTKSL DFDRAKSEIP IMIRKDLDLK KEAKGLTKKI 180 QLQAVSEKPK LQRSRSPSAD AAIETIHKRP ALMICNFFRK GWCIKGNACR FLHQIDGAEN 240 NGENTTREPH EMESNAGFIG ETEASEIPPS SSNLFFHRSL VRTYGNEKQG EGFSTGSVRS 300 IRQSPFTNGR SNSTFNHLYG RSNTYRDFSS GLNERMLCEN MAAPDHLDGR FSSRNTLLMG 360 NSKVPDPRFS PSSPSIYHNR MHDPFHNEKY TLDRSLLMQR NQYESGNLYR AEISNPARPR 420 SFHYRHLQIS SHGHHYASQR NDLLNVNNTL QFDKGYHSRS YSTLGKYPVQ NIPQEPQVFM 480 NRKAQHMEKS NWEPSMRFCS SFDSSSGIKF DHQMASFESP TGLCANTHLV ARERHSLRET 540 VSRSHASSDV SSGHLMNEHV SVPTELPFRI PSEERNWVTS AVDISNTTPM GYNMRNQEEE 600 YRKTKQFKVL KFFRDALIEF VKDLLKPSWR EGHLSKDSHK MIVKKAVEKV LGTLQPQQIP 660 NDAESISQYF SISRPKITKL VEGYIEKYKF GNQ*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MSIRDSESIP NSSSEEDDYE DVEEIEVYEE GFSDTEDDRE EKKGKDDAGY SDGEVERRKG  60
IPNGDDGFDG IKNDFISSKP ELQTGHNSVS DRKEIDQNHQ TTVISEKHTI SLDGGRPKPL  120
AGENADSFNI ELVHPSAYVN HLGGENTKSL DFDRAKSEIP IMIRKDLDLK KEAKGLTKKI  180
QLQAVSEKPK LQRSRSPSAD AAIETIHKRP ALMICNFFRK GWCIKGNACR FLHQIDGAEN  240
NGENTTREPH EMESNAGFIG ETEASEIPPS SSNLFFHRSL VRTYGNEKQG EGFSTGSVRS  300
IRQSPFTNGR SNSTFNHLYG RSNTYRDFSS GLNERMLCEN MAAPDHLDGR FSSRNTLLMG  360
NSKVPDPRFS PSSPSIYHNR MHDPFHNEKY TLDRSLLMQR NQYESGNLYR AEISNPARPR  420
SFHYRHLQIS SHGHHYASQR NDLLNVNNTL QFDKGYHSRS YSTLGKYPVQ NIPQEPQVFM  480
NRKAQHMEKS NWEPSMRFCS SFDSSSGIKF DHQMASFESP TGLCANTHLV ARERHSLRET  540
VSRSHASSDV SSGHLMNEHV SVPTELPFRI PSEERNWVTS AVDISNTTPM GYNMRNQEEE  600
YRKTKQFKVL KFFRDALIEF VKDLLKPSWR EGHLSKDSHK MIVKKAVEKV LGTLQPQQIP  660
NDAESISQYF SISRPKITKL VEGYIEKYKF GNQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q1G0	0.0	A0A0K9Q1G0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11010	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Zosma11g01270.1