PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00170.1
Common NameZOSMA_118G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 463aa    MW: 51061.9 Da    PI: 7.6318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-056991123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F r+ nL+ H r H
  Zosma118g00170.1 69 FTCEVCNRGFLRHQNLQLHRRGH 91
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-66991No hitNo description
SMARTSM003550.0316991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6996991IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-46991IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355120110140IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-6140164No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSAQSDKNKL KIAREVEKEN GAEMEEGQGG IAIAPPSMLK RKRNLPGRPD PNSEVIKLSP  60
KQLTAASNFT CEVCNRGFLR HQNLQLHRRG HNLPWQLHNP STLPPRKKVF VCPVETCIHH  120
NPSRALGDLS GIKKHFVRKH GEKIWRCNKC EKRYAIKADL VTHSTTCGSQ RYKCTCGIFF  180
SKKNNFMTHQ ICCTLQSDKR KEEQASDSNP PPVVNPSSFS SGDAPPPIHC ICGITFSSME  240
TMDLHKLFCY KTITETIKIK ASESSTTNVF DDNIFGNRNP KIGHPLLLES SLKMDTASIL  300
LRDKSSSSEM NFMPINSIGV PKEATRPIGM KNVQEIGNEM GSMTPQLGFQ KLLDQANPIA  360
DDGLENLLEL DSFCKDISKM EDRKIAEDDC NSGGGGGSGN DEVHDIGPSS MFNDYPWMDD  420
GVLGLGTSSV DSLNVNNNHW FNFSATTGFG PASFDSVLPS EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-15141193355Zinc finger protein JACKDAW
5b3h_F9e-15141193355Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3X10.0A0A0K9Q3X1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-74C2H2-like zinc finger protein