PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma116g00290.1 | ||||||||
Common Name | ZOSMA_116G00290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | YABBY | ||||||||
Protein Properties | Length: 194aa MW: 21575.7 Da PI: 9.8865 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.6 | 2.2e-64 | 7 | 164 | 6 | 168 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +e+vCyv+CnfCntilavsvP +++f++vtvrCGhC++llsvnl + + ++ k + + + +++ + +++s+ ++ Zosma116g00290.1 7 PAEHVCYVNCNFCNTILAVSVPCNTMFNIVTVRCGHCANLLSVNLGGTLHPNVGIPY--NQSKSLQNGNIRGLDRHGIMECGSSSSS---RKC 94 689*******************************************99988777765..2333333333333333322222222222...222 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 +k+ + ++ + + p + PPekrqrvPsaynrfik eiqrik++nPdishreafsaa+knWahfP+ih Zosma116g00290.1 95 NKIASVKNMNKQFLPSIHPPPEKRQRVPSAYNRFIKAEIQRIKSNNPDISHREAFSAASKNWAHFPRIHL 164 2332222222233466778**************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-65 | 7 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.9E-8 | 109 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-4 | 115 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSLEAVPAEH VCYVNCNFCN TILAVSVPCN TMFNIVTVRC GHCANLLSVN LGGTLHPNVG 60 IPYNQSKSLQ NGNIRGLDRH GIMECGSSSS SRKCNKIASV KNMNKQFLPS IHPPPEKRQR 120 VPSAYNRFIK AEIQRIKSNN PDISHREAFS AASKNWAHFP RIHLNHNMEA DKEMRHGDEV 180 IAGGRRDPKL RHN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247851.1 | 1e-63 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q2QM17 | 2e-58 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0K9Q1Z1 | 1e-141 | A0A0K9Q1Z1_ZOSMR; Protein YABBY 6 | ||||
STRING | XP_010247851.1 | 5e-63 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma116g00290.1 |