PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma115g00120.1
Common NameZOSMA_115G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 279aa    MW: 30484.6 Da    PI: 10.0034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma115g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17185218134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+C++  Tp+WR gp g+ktLCnaCG++y++ +
  Zosma115g00120.1 185 CSHCRAVVTPQWRAGPMGPKTLCNACGVRYKSGR 218
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.319179215IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-13179229IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14183242No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13183216IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
CDDcd002026.61E-12185241No hitNo description
PfamPF003205.2E-15185218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMKSADYYSG KASADDGKQI SLLPNPSSIP AHQSISNQQR LIDDDKDRDK DNCIVVENGP  60
PLPPPALPSV SPSSSSSSSM NTGSKAPIII SNSSGIFTTL TNRGRAPRTK RRKFIPKHPL  120
NKRPVDFPIP ALECDITEER QSKKLKTVHP SSTSVEINLP PTPSSQPRNS ILVPCQKDEE  180
TIRNCSHCRA VVTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPSASPT FEESRHSNNH  240
KKVVELRGMN ANVAKDVKTP ASTKGCELLN YINDGCRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q2560.0A0A0K9Q256_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-32GATA family protein