PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma113g00080.1
Common NameZOSMA_113G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 139aa    MW: 15358.8 Da    PI: 10.7431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma113g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1865114255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+ ++ a+++++g
  Zosma113g00080.1  65 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARVHDVAALSIKG 114
                       7*****998.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2165123IPR016177DNA-binding domain
SMARTSM003809.8E-3165128IPR001471AP2/ERF domain
PfamPF008471.2E-1165114IPR001471AP2/ERF domain
PROSITE profilePS5103222.61665122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3165123IPR001471AP2/ERF domain
CDDcd000182.36E-3066124No hitNo description
PRINTSPR003674.6E-106677IPR001471AP2/ERF domain
PRINTSPR003674.6E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAGMKIGNPT AIVVDIAGGN SDRYQISIAK QLIQEGSDSW NTISGKDLNH APLLVKINET  60
LVHKVYRGVR MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARVHDVAAL SIKGNAAFLN  120
FPDLIDLLPR PTTQLRAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19631271277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885179.19e-41dehydration-responsive element-binding protein 3-like
RefseqXP_022962316.14e-41dehydration-responsive element-binding protein 3-like
RefseqXP_024930268.19e-41dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-39DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0K9Q2M25e-97A0A0K9Q2M2_ZOSMR; Uncharacterized protein
STRINGXP_009367456.15e-40(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]