PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma111g00090.1
Common NameZOSMA_111G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 248aa    MW: 28774.4 Da    PI: 6.3645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma111g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16653148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd  ++++++ +G g+W+  a   g++Rt+k+c++rw++yl
  Zosma111g00090.1  6 RGPWTLEEDNAIIKCIAIHGEGRWNHLAISSGLKRTGKSCRLRWLNYL 53
                      89********************************************97 PP
2Myb_DNA-binding49.59.5e-1660102246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g+ T eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zosma111g00090.1  60 GNLTVEEQMLIIELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 102
                       67799****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.575157IPR017930Myb domain
SuperFamilySSF466892.25E-304100IPR009057Homeodomain-like
SMARTSM007171.1E-14555IPR001005SANT/Myb domain
PfamPF002496.4E-15653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20760IPR009057Homeodomain-like
CDDcd001671.73E-10853No hitNo description
SMARTSM007172.7E-1558106IPR001005SANT/Myb domain
PROSITE profilePS5129419.16658108IPR017930Myb domain
PfamPF002499.8E-1560102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2261106IPR009057Homeodomain-like
CDDcd001671.99E-1163102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDELRRGPWT LEEDNAIIKC IAIHGEGRWN HLAISSGLKR TGKSCRLRWL NYLKPDLKHG  60
NLTVEEQMLI IELHSKWGNR WSKIAQYLPG RTDNEIKNYW RTKVKKHARQ LKIDVNSTLF  120
RDTIRCFWMP RLIENERVTS SAKQLIQSTN QDTVVDTIQI QPPYQPLPLP TNQLIAPDYN  180
NLYQNAVNTE NIPFFYDDSI NSAENFNRVE LYLNTDVPGD NSGGGSSVSD YSEMEDNLWK  240
YMDELLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2631061103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-25310655157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-25310655157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017701316.14e-79transcription factor MYB62-like
SwissprotQ10MB42e-70MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0K9Q3290.0A0A0K9Q329_ZOSMR; Uncharacterized protein
STRINGXP_008807088.11e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-72myb domain protein 62
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]