PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g00510.1
Common NameZOSMA_10G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 184aa    MW: 20615 Da    PI: 10.8589
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.9e-4267142277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cqv++C+adl  ak+yhrrhkvCevhska+vv+v+gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk +
  Zosma10g00510.1  67 CQVDKCAADLILAKRYHRRHKVCEVHSKAAVVIVAGLRQRFCQQCSRFHQLSEFDESKRSCRRRLAGHNERRRKIS 142
                      **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.9E-3460128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.82164141IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3866144IPR004333Transcription factor, SBP-box
PfamPF031107.6E-3267140IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEKRKGREPQ KAPSLKENDR SSEEREGERR SAVDFSSTIT ASITTATVRT TSNLRKGVGN  60
GQPQLSCQVD KCAADLILAK RYHRRHKVCE VHSKAAVVIV AGLRQRFCQQ CSRFHQLSEF  120
DESKRSCRRR LAGHNERRRK ISSESQKERR NTDADSSAAS NANLNPNPNP NAAGATQNYK  180
YSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-37671401184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382775.29e-45PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387418e-40SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0K9Q3C61e-131A0A0K9Q3C6_ZOSMR; Squamosa promoter-binding protein 1
STRINGGSMUA_Achr2P03070_0014e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.18e-41squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]