PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK22320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 21356.1 Da PI: 9.9804 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.1 | 4.6e-42 | 64 | 140 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e+C+adls+ak+yhrrhkvCe+h+ka+vvlvsg++qrfCqqCsrfhelsefDe++rsCrrrLa+hnerrrk++ PK22320.1 64 CCQAEKCSADLSDAKQYHRRHKVCEIHAKAQVVLVSGIRQRFCQQCSRFHELSEFDETRRSCRRRLAGHNERRRKSS 140 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.2E-33 | 57 | 126 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.419 | 62 | 139 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.28E-38 | 63 | 142 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-32 | 65 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MELGKIERNK RMTVSGKEKM VVKREDEDED ESSEQEDKRK KGLLVLGVGV GSGKKGSSGA 60 GMRCCQAEKC SADLSDAKQY HRRHKVCEIH AKAQVVLVSG IRQRFCQQCS RFHELSEFDE 120 TRRSCRRRLA GHNERRRKSS GESHQESSSR KGTATQLKDM VCGQIDERGR IQISVQENNS 180 YKHFQIR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-39 | 56 | 138 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00634 | PBM | 25215497 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814874.1 | 7e-78 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
Refseq | XP_021291062.1 | 4e-77 | squamosa promoter-binding-like protein 3 isoform X2 | ||||
Swissprot | Q9S7A9 | 6e-47 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A2P5DNH3 | 6e-88 | A0A2P5DNH3_TREOI; SBP-box transcription factor | ||||
STRING | XP_010091480.1 | 7e-76 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53160.2 | 8e-42 | squamosa promoter binding protein-like 4 |