PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g00470.1
Common NameZOSMA_10G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 402aa    MW: 44895.9 Da    PI: 4.4582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.1e-12185282297
                      EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      +k+l +sdv++ gr+vlpk+  e+      + +e+++l+++ + +  +W++++++  ++ks++yvl+ ++ eF + +gLk gD + ++  ++++
  Zosma10g00470.1 185 QKELRNSDVNNIGRIVLPKRESESTlpfL-SVKEGIQLSIMELFNpCVWRMRYRFwpNNKSRMYVLE-NTGEFIRRHGLKCGDYIAIY--QDMS 274
                      7999******************999**63.4446678888885555*******9989999999**99.********************..6777 PP

                      E..EEEEE CS
               B3  90 felvvkvf 97 
                      ++l++  +
  Zosma10g00470.1 275 KQLYICSR 282
                      75555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-19183286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-16184283IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.3E-9184283IPR003340B3 DNA binding domain
PfamPF023625.6E-9185282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSNPPHSNIP PRSFGCSSLA TVPPLQYSSD ELNVEFISHV GSSSSSSPFP LSLDECYNIQ  60
QTPYTFTSSS SSSAPASTYV FTNMTAPVEE SGTGVQQYLM NNNYDQMIGV PSWWPLHGGD  120
EMGNTEVQQQ TYSATTTTCS SAPTCLASWM DQNQSMPLTL QYSPYTQDLS LFPSLEHMGY  180
GFVLQKELRN SDVNNIGRIV LPKRESESTL PFLSVKEGIQ LSIMELFNPC VWRMRYRFWP  240
NNKSRMYVLE NTGEFIRRHG LKCGDYIAIY QDMSKQLYIC SRRVERPLLE ENPTPSSTTT  300
PVVTAAQMTS NAVVDMQTME EQGQATRDSF EMGSGFFDTS LESGDNSFQF TDPSTSLFDT  360
ARGDHYSTRH LESLPNIEDC DLSIYDVVPE KTTGGDHRVL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-3318527814107B3 domain-containing transcription factor LEC2
6j9c_D1e-3318527814107B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3M40.0A0A0K9Q3M4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-33B3 family protein