PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma10g00450.1

Common Name

ZOSMA_10G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 349aa MW: 37380.8 Da PI: 8.2147

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma10g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++kalkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Zosma10g00450.1 34 TQKALKCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 94 57999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	32	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MNHAHHVHNS HSAKPTGPNS MAASAAAAGR AMETQKALKC PRCDSANTKF CYYNNYSLSQ 60 PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRVKKVSSTS SAISSNPLPT MVSDLSSLPL 120 QISNLPIPPS SNSGAIDPIF YGLHNNSTDL NSFPDFLKRL DQRSGISNVN TSCNDQYDLN 180 PLLNTMGLCY PLNYSGNLQF HQPDHNGATL ANIAPSTMTS TSLAREFLLL GSSFSSSSTS 240 LGLHPKMDPN ISGCTPPYQD IQAAVANGGG GLGLFKDVKE GDTSKYGMDH SDHRLEWQIP 300 CNETPLENIS AVGEPNSLYW NINTSGIGSN GWPETTGTNC GPSVTPLI*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MNHAHHVHNS HSAKPTGPNS MAASAAAAGR AMETQKALKC PRCDSANTKF CYYNNYSLSQ  60
PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRVKKVSSTS SAISSNPLPT MVSDLSSLPL  120
QISNLPIPPS SNSGAIDPIF YGLHNNSTDL NSFPDFLKRL DQRSGISNVN TSCNDQYDLN  180
PLLNTMGLCY PLNYSGNLQF HQPDHNGATL ANIAPSTMTS TSLAREFLLL GSSFSSSSTS  240
LGLHPKMDPN ISGCTPPYQD IQAAVANGGG GLGLFKDVKE GDTSKYGMDH SDHRLEWQIP  300
CNETPLENIS AVGEPNSLYW NINTSGIGSN GWPETTGTNC GPSVTPLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q5I9	0.0	A0A0K9Q5I9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma10g00450.1