PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G28310.2

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 325aa MW: 35444.3 Da PI: 9.411

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G28310.2	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	3e-38	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ AT1G28310.2 37 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 97 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-33	40	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-27	41	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MPIISSPNTN PLASMQSKNM IVASSHQQQQ QQQPQQPQPQ LKCPRCDSSN TKFCYYNNYS 60 LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRVKRPS TATTTTASTV STTNSSSPNN 120 PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS 180 LSALGLGLPH QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG 240 DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL DPSNYNNMWN 300 NASVVNGAWL DPTNNNVGSS LTSLI

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT1G28310
AtGenExpress	AT1G28310

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G28310.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G28310

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY299272	0.0	AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001031100.2	0.0	Dof-type zinc finger DNA-binding family protein
Swissprot	Q9FZA4	0.0	DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBL	A0A178W100	0.0	A0A178W100_ARATH; Uncharacterized protein
TrEMBL	Q2V4K7	0.0	Q2V4K7_ARATH; Dof-type zinc finger DNA-binding family protein
STRING	AT1G28310.2	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50
Representative plant	OGRP38	17	445

Link Out ? help Back to Top
Phytozome	AT1G28310.2
Entrez Gene	839725
iHOP	AT1G28310
wikigenes	AT1G28310

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Yanagisawa S The Dof family of plant transcription factors. Trends Plant Sci., 2002. 7(12): p. 555-60 [PMID:12475498] Lijavetzky D,Carbonero P,Vicente-Carbajosa J Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evol. Biol., 2003. 3: p. 17 [PMID:12877745] Ayele M, et al. Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. Genome Res., 2005. 15(4): p. 487-95 [PMID:15805490]