PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma10g00270.1 | ||||||||
Common Name | ZOSMA_10G00270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20441.4 Da PI: 8.5993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ g+W+AeIrdp+ + r++lg+f t+e+Aa a+++a+ +++g Zosma10g00270.1 56 RYRGIRQRS-YGKWAAEIRDPV----KgVRVWLGTFTTPEKAACAYDQAAVRIRG 105 7*****999.8*********75....44************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-35 | 56 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-27 | 56 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-30 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 56 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.563 | 56 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 95 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MCGGAVLSDL LSTQSVVFFN TDVACRQAAN KVGVGEGDCR RKGFRRLAAV KKKKNRYRGI 60 RQRSYGKWAA EIRDPVKGVR VWLGTFTTPE KAACAYDQAA VRIRGKKAKL NFPIKENEEL 120 SLVSPPSPSP LSLLLVDDLV EIEGYTKFMI DDQMSSPLLE YTDDDYTDNS MQDAPLPLWN 180 FDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 53 | 117 | 2 | 67 | ATERF1 |
3gcc_A | 1e-22 | 53 | 117 | 2 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 53 | RRKGFRRLAAVKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q3L0 | 1e-133 | A0A0K9Q3L0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma10g00270.1 |