PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma106g00030.1
Common NameZOSMA_106G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 576aa    MW: 63194.5 Da    PI: 4.9757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma106g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.32.2e-1261785431374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv++Ll+cA+a++++++ la++l+a++  la+++g +m+++a+yf+ ALa r+++    + ++ ++ ++ e+nss++l     f+e++P+lkf
  Zosma106g00030.1 178 LVHALLACANAIHQQNNPLAETLIAKITLLAASQGGAMRKVATYFAGALALRIYH---PIHSSPNTIKS-ETNSSDHLET--HFYEACPYLKF 264
                       689***************************************************9...44444444444.3456666554..5********** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +h+ aNqaI ea++g+ +vH+iD+++++G+QWp+L+qaL+ Rpegpp +R+Tg+g+p++ + + lee+g++La++Ae+l+++fe++ +v+++l
  Zosma106g00030.1 265 AHFSANQAIFEAFAGKPHVHVIDLGLKHGMQWPPLMQALSLRPEGPPLFRLTGIGAPQPINPNGLEEVGWKLAELAESLHIKFEYRHIVTNSL 357
                       ********************************************************************************************* PP

              GRAS 187 edleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       +dle+ ++++++     ++aVn+vl+ hrll+++ ++e+    vL++v+sl+P +++v eqea+hn++ F++rf+eal+yys +fdsle +  
  Zosma106g00030.1 358 ADLEPYMFDLNTdqqSSTVAVNSVLEFHRLLASPNTIEK----VLETVRSLKPAILTVFEQEANHNGTVFVDRFTEALHYYSNIFDSLEGGC- 445
                       *******9999988889**************99999999....***********************************************96. PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                        +  ++  +++++lg++i+nvvaceg+er+erhe++++W++r+ +aGF+ +pl++++  qa+lll+  + ++g rvee++g+l+lgW++rpL+
  Zosma106g00030.1 446 -AMTTDLAMSEMYLGQQICNVVACEGRERKERHENAKQWKKRFFAAGFEMAPLGSNVFRQASLLLEFDSgKEGCRVEENDGCLMLGWHSRPLF 537
                       .5678999**********************************************************9999*********************** PP

              GRAS 369 svSaWr 374
                       ++SaWr
  Zosma106g00030.1 538 TTSAWR 543
                       *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011296.2E-1833128No hitNo description
PfamPF120412.5E-2333122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098558.605152522IPR005202Transcription factor GRAS
PfamPF035147.7E-124178543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:0090378Biological Processseed trichome elongation
GO:2000033Biological Processregulation of seed dormancy process
GO:2000273Biological Processpositive regulation of receptor activity
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKRGHQEVDG VTDDGGGAQT STYRKLVEED EDDKLLAELG YKVRLSSMTD VADKLEKLEM  60
AIDFDAGTAG FGFDGVGVGV GLGVDNNNTS VLSHLASETV HYDPSDLNSW VENMLSGLKL  120
PPSLEDKDEE QVDDLAAIIP ASTRRIKIST ISTISTNLPQ PQIPALLVED SQEAGIHLVH  180
ALLACANAIH QQNNPLAETL IAKITLLAAS QGGAMRKVAT YFAGALALRI YHPIHSSPNT  240
IKSETNSSDH LETHFYEACP YLKFAHFSAN QAIFEAFAGK PHVHVIDLGL KHGMQWPPLM  300
QALSLRPEGP PLFRLTGIGA PQPINPNGLE EVGWKLAELA ESLHIKFEYR HIVTNSLADL  360
EPYMFDLNTD QQSSTVAVNS VLEFHRLLAS PNTIEKVLET VRSLKPAILT VFEQEANHNG  420
TVFVDRFTEA LHYYSNIFDS LEGGCAMTTD LAMSEMYLGQ QICNVVACEG RERKERHENA  480
KQWKKRFFAA GFEMAPLGSN VFRQASLLLE FDSGKEGCRV EENDGCLMLG WHSRPLFTTS  540
AWRIPSYLAS SSIAAVATTA ISSLRDVVDR SEYLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-561785434375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956747.10.0DELLA protein GAI
RefseqXP_025690331.10.0DELLA protein GAI
SwissprotQ84TQ71e-179GAI_GOSHI; DELLA protein GAI
SwissprotQ8S4W71e-179GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K9Q4B40.0A0A0K9Q4B4_ZOSMR; DELLA protein GAI1
STRINGXP_010274729.10.0(Nelumbo nucifera)
STRINGXP_006307228.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-174RGA-like 1