PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma105g00310.1 | ||||||||
Common Name | ZOSMA_105G00310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 27930.2 Da PI: 7.0511 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.1 | 3.5e-19 | 50 | 141 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y +YA + GFsvrk ++++sk+ k+t+vCskeg ++ k ++ + r+ + rt+Cka + +k e ++w+++ ++ HnHe Zosma105g00310.1 50 LYYKYAGHKGFSVRKGSTRHSKK--GLRKKTYVCSKEGISRAIVPKiqnpleKSGRPRQIRNPRTNCKALMSLKIE-GDEWMISVFKDIHNHE 139 79******************944..37************998777777887666666778899************9.9*************** PP FAR1 89 la 90 ++ Zosma105g00310.1 140 MS 141 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-17 | 50 | 141 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MKLFATYIDY CDATTEMCGE EEDNMQTPSR ECEEPKVGMK FTTIGEVEEL YYKYAGHKGF 60 SVRKGSTRHS KKGLRKKTYV CSKEGISRAI VPKIQNPLEK SGRPRQIRNP RTNCKALMSL 120 KIEGDEWMIS VFKDIHNHEM STPSLKSSEE DVEDIDDNDP DRFYSHLIFI PQITVCLLVF 180 NLLIQLKWNV HVCSSMFTLS VTGIPQYIGW VYLLDTCSLK KEIILERPGV AGTSLGLDNK 240 ICATAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q4W2 | 0.0 | A0A0K9Q4W2_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-11 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Zosma105g00310.1 |