PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma103g00680.1

Common Name

ZOSMA_103G00680

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 250aa MW: 28362.4 Da PI: 8.0398

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma103g00680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.4	1.8e-29	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW+++LH++F++av+ LGG++kAtPk+il+lm+v+gL ++h+kSHLQ+YR+ Zosma103g00680.1 18 PRIRWSEDLHRSFIDAVDCLGGHQKATPKRILHLMNVNGLGVAHIKSHLQMYRT 71 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-26	14	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-13	16	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-23	18	71	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MRKSQAREVR HYNRSDSPRI RWSEDLHRSF IDAVDCLGGH QKATPKRILH LMNVNGLGVA 60 HIKSHLQMYR TSGDHRAAQE LHSFLDPKNK RKRRTINHDD HSTGTTALSK SYKQAQGRSN 120 ILADSSFARN SMEEMRKKLD YSTHKDQTDI PSNYQLGKEA TVTGECSQYK GEGDDCKLSL 180 WSFMSDEKIK GGDREDKSEI ESDIDDQIDA DDSCFNRSHK PFQATSLNLE LSMALPLPTT 240 TTTVYDRSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q6A0	0.0	A0A0K9Q6A0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-23	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma103g00680.1