PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G14600.1

Common Name

T5E21.10

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 255aa MW: 29094.3 Da PI: 7.5041

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G14600.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR AT1G14600.1 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-29	20	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.628	20	80	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.3E-22	24	76	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.58E-15	24	76	IPR009057	Homeodomain-like
Pfam	PF00249	7.8E-8	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ DNEEDHLHDN LSVHARNDCL 120 LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN 180 TWRENEHEEE EELSLSLSLN HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS 240 KIDLNLNLSF SLLHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	25	79	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	79344639	0.0
Expression Atlas	AT1G14600	-
AtGenExpress	AT1G14600	-

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G14600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G14600

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630486	0.0	AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_172912.3	0.0	Homeodomain-like superfamily protein
Swissprot	Q700D9	0.0	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A178WCG0	0.0	A0A178WCG0_ARATH; Uncharacterized protein
STRING	AT1G14600.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52
Representative plant	OGRP285	15	123

Link Out ? help Back to Top
Phytozome	AT1G14600.1
Entrez Gene	838022
iHOP	AT1G14600
wikigenes	AT1G14600

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Gong W, et al. Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol., 2004. 135(2): p. 773-82 [PMID:15208423]