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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma101g00780.1 | ||||||||
Common Name | ZOSMA_101G00780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 27978.3 Da PI: 8.9336 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.5e-33 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+a++qLGG+e+ tPk +l++m+v+gLt++hvkSHLQkYRl Zosma101g00780.1 52 RQRLRWTHELHERFVDAIAQLGGPERSTPKGVLRVMDVQGLTIYHVKSHLQKYRL 106 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.888 | 49 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 50 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-16 | 51 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.5E-24 | 53 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-8 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-21 | 135 | 181 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNQSKVELVS SSSNNNNGTK IQEHGLEKSG SSVVSFNGRR NAITINKPLS SRQRLRWTHE 60 LHERFVDAIA QLGGPERSTP KGVLRVMDVQ GLTIYHVKSH LQKYRLSKYL SVPESSPDGP 120 KAENRDLSDF DYPSMQITES LKLQMEVEKR LHEQLEVQKQ LQLRIEAQGR YLKRIIDQQQ 180 RRNMVIEENP SNIDDARFQP FQQCENSEDL MIQSGSHPGT PEHEKQIKRQ KDDGYVKQES 240 NSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-23 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-23 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-23 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-23 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-23 | 52 | 109 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586674.1 | 3e-72 | MYB-CC domain-containing transcription factor PHR14 isoform X2 | ||||
Refseq | XP_028179994.1 | 3e-72 | myb family transcription factor PHL7-like isoform X2 | ||||
Refseq | XP_028758559.1 | 3e-72 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_028758560.1 | 3e-72 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_028758561.1 | 3e-72 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_028758562.1 | 3e-72 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_028758563.1 | 3e-72 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 4e-66 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0K9Q5L9 | 1e-179 | A0A0K9Q5L9_ZOSMR; MYB transcription factor | ||||
STRING | XP_002525238.1 | 3e-70 | (Ricinus communis) | ||||
STRING | Migut.M01479.1.p | 2e-70 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-68 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma101g00780.1 |