PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma101g00200.1 | ||||||||
Common Name | ZOSMA_101G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | YABBY | ||||||||
Protein Properties | Length: 259aa MW: 28197.7 Da PI: 8.3914 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 204.3 | 4.6e-63 | 19 | 208 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........................lle 73 s seq+Cyv+Cn C+t+lavsvP++slfk+vtvrCGhC++llsvn++ + + + ++ ++ Zosma101g00200.1 19 SPSEQLCYVHCNICDTVLAVSVPYSSLFKTVTVRCGHCSNLLSVNMRALHMQPPPPPPNPLNFANNtaffqtnlleeittcsapspaaasAPS 111 689********************************************9996665554434444444456777777789999999987664444 PP YABBY 74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 v+ +s + +++++st ++++ s+ +++ +++ v++PPekrqrvPsaynrfik+eiqrika+nP+i+hreafsaaaknWa+fP+i Zosma101g00200.1 112 ASSVAPAPPSSFDNHQHQTSTAKETTLRSRRSEDFIQQSLSVNKPPEKRQRVPSAYNRFIKDEIQRIKAGNPEITHREAFSAAAKNWAYFPHI 204 44555555566666777777766665557777777888889**************************************************** PP YABBY 167 hfgl 170 hfgl Zosma101g00200.1 205 HFGL 208 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-66 | 20 | 208 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 154 | 201 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.4E-4 | 155 | 200 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSSSLTTSTL SLETHLTSSP SEQLCYVHCN ICDTVLAVSV PYSSLFKTVT VRCGHCSNLL 60 SVNMRALHMQ PPPPPPNPLN FANNTAFFQT NLLEEITTCS APSPAAASAP SASSVAPAPP 120 SSFDNHQHQT STAKETTLRS RRSEDFIQQS LSVNKPPEKR QRVPSAYNRF IKDEIQRIKA 180 GNPEITHREA FSAAAKNWAY FPHIHFGLMP DHQGGGLKKN NNNIRHKVKD DATADHDVML 240 KDGLYVTAAS ANMGVTPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787013.1 | 4e-80 | protein YABBY 4-like | ||||
Refseq | XP_010919475.2 | 4e-80 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-68 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-68 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0K9Q584 | 0.0 | A0A0K9Q584_ZOSMR; Protein YABBY 4 | ||||
STRING | XP_008787013.1 | 1e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma101g00200.1 |
Publications ? help Back to Top | |||
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