PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM6G613247_P01
Common NameZm.32398
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HRT-like
Protein Properties Length: 387aa    MW: 42955.8 Da    PI: 10.2969
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM6G613247_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like45.99.4e-15148177131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        +CGv+ledG +C ++Pv+gRKRC  HKG+R+
  GRMZM6G613247_P01 148 VCGVLLEDG-FCLEHPVHGRKRCSLHKGKRV 177
                        7********.7*******************7 PP
2HRT-like50.14.6e-16349378130
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        +CG++++dGs C++ P++gRKRC+ HKG+R
  GRMZM6G613247_P01 349 TCGARTSDGSRCMNMPIEGRKRCALHKGQR 378
                        7****************************9 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDNKQEAEKT EALLLRVFDY AWNKLQNGAC RRQEILHKLE LRAANHRSLL SRVSDMKQKI  60
FGQKAGINIK GSGPANTSPS IIKSMLPRVR TIVRFRPQLV NPNNSEGGIT GIPYANRQAH  120
RRKSKGYQVK KFDVTKRRTV PIHDSNSVCG VLLEDGFCLE HPVHGRKRCS LHKGKRVKGS  180
PKSSPTSHPC QVGIAITEFC LTEDLDSSVP KQESEIRPKN MSTTLKEPQR QSDNLESQKV  240
NTGEASTEDG TQEVSRDACI LEEKAFFHAD SESQEQQPSG RMWFELLKSQ RKPASAHPSR  300
RGLGSQITAM TDNRSCKMVS IAGMERTEKD SGVEVTAASF SRSSGWPCTC GARTSDGSRC  360
MNMPIEGRKR CALHKGQRAA FPPTPSA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323980.0ear| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM6G613247
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM6G613247_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587570.0HQ858757.1 Zea mays clone UT1499 HRT transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130774.20.0uncharacterized protein LOC100191878
TrEMBLA0A3L6E3950.0A0A3L6E395_MAIZE; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLB6SKF80.0B6SKF8_MAIZE; Uncharacterized protein
TrEMBLF1DJZ90.0F1DJZ9_MAIZE; HRT transcription factor (Fragment)
STRINGGRMZM6G613247_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.16e-17effector of transcription2