PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM6G039492_P01
Common NameIDP2395
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 390aa    MW: 39442.2 Da    PI: 8.5128
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM6G039492_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31105158255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH+rFv+av  LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM6G039492_P01 105 PRMRWTTALHARFVHAVGLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 158
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-15103159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28103159IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-23105158IPR006447Myb domain, plants
PfamPF002496.2E-7106157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLRRNLPNLS LQISPPAAAA SDAPATYSEG SSDEVGLFAN PSSGAEPPPP GLSLGLATPA  60
RGDNDDATGR RGHLQPPQGC AFKRAAAGSS SLPAGSKSKR SARAPRMRWT TALHARFVHA  120
VGLLGGHERA TPKSVLELMN VKDLTLAHVK SHLQMYRTVK STDRSLHIAT GEALPPVKRT  180
TTTATAKDAA AAAAVAAAAG GGGGGGAAVA VPVSACDDMV GICSSPSAGS APPATATTIS  240
AAHFICAPAA TAPLAAAGAA APSPPPPIPP RSRTDHAPAA VPEKGVAIAD SLSLHRCQKH  300
NFSPAVLQDT QQAAQDEEAN NNNGQLATGR LRGSVDPMAT NCSSPASSSS PSLASLEQQT  360
ADDMCAPSLE ISLGRRHWSA EERPEGVSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-17106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-17106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-17106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-17106160357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.335360.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM6G039492
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM6G039492_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0649760.0BT064976.1 Zea mays full-length cDNA clone ZM_BFc0084O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168849.10.0uncharacterized protein LOC100382654
TrEMBLC0P9K70.0C0P9K7_MAIZE; Putative transcription factor KAN4
STRINGGRMZM6G039492_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-33G2-like family protein