PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G887276_P04
Common NameLOC100275291
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 390aa    MW: 41111.3 Da    PI: 7.2571
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G887276_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.63.6e-157362655
            G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       +AtPk++l+lm+v gLt++hvkSHLQ+YR 
  GRMZM5G887276_P04  7 EATPKRVLQLMGVGGLTISHVKSHLQMYRN 36
                       7****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-14639IPR009057Homeodomain-like
SuperFamilySSF466891.43E-5638IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-11736IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLYVVAEATP KRVLQLMGVG GLTISHVKSH LQMYRNMRND LGMQGTTMQL VHRAEEHVYG  60
LGGMHMELCA DTQRRQPQCG HDECDGPACC CIVVCRSPPP PKPGKEATTL FQRQLKSVFA  120
MEEPNNSGAG RRREREEMDG SASPKRVLLR GGPGPGTCEG DGSPSPPSAS GGLCWALATA  180
AAGGYNSYMR MMQAAMGMAA GARAPPPRTL RHPPRHAETT VEPSRGPGIK RQAQMQSASA  240
RPGAQGGEHA APALRPRSTS SSEQLITFSG FVVAQKQPPP PPPPCCSRDH PFEMVGTALI  300
AHGASAEARC GLETPPRLPA VAEQAGGDPC WTSSAGSEDD HDEEEDGCSL SLSLATRSSR  360
SSGDEGGRLS PTAATSWGSQ ISLDLSLSTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.366550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G887276
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G887276_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0847490.0BT084749.1 Zea mays full-length cDNA clone ZM_BFb0172L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142882.10.0uncharacterized LOC100275291
TrEMBLC0PKU10.0C0PKU1_MAIZE; Putative Myb family transcription factor
STRINGGRMZM5G887276_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.15e-11G2-like family protein