PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G04580.1 | ||||||||
Common Name | F4H6.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 166aa MW: 19215.8 Da PI: 9.3426 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.2 | 3.2e-27 | 15 | 68 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt +L rF++++e+LGG+e AtPk+il lm+v +Lt++hvkSHLQ+YR AT4G04580.1 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYRN 68 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 11 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.808 | 11 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 13 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.9E-27 | 14 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-9 | 16 | 67 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG VRDLTISHVK 60 SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT QFIQNQQRLQ LDNTEKITPV 120 LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18412612 | 0.0 | ||||
Expression Atlas | AT4G04580 | - | ||||
AtGenExpress | AT4G04580 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G04580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G04580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF074021 | 7e-58 | AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence. | |||
GenBank | AL161501 | 7e-58 | AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13. | |||
GenBank | CP002687 | 7e-58 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192367.1 | 1e-120 | Homeodomain-like superfamily protein | ||||
TrEMBL | A0A178USM1 | 1e-118 | A0A178USM1_ARATH; Uncharacterized protein | ||||
TrEMBL | Q9XEB2 | 1e-118 | Q9XEB2_ARATH; Homeodomain-like superfamily protein | ||||
STRING | AT4G04580.1 | 1e-119 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 | Representative plant | OGRP285 | 15 | 123 |
Link Out ? help Back to Top | |
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Phytozome | AT4G04580.1 |
Entrez Gene | 825790 |
iHOP | AT4G04580 |
wikigenes | AT4G04580 |
Publications ? help Back to Top | |||
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