PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G882527_P04 | ||||||||
Common Name | si683023f08 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27762.3 Da PI: 8.8277 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.6e-10 | 149 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq GRMZM5G882527_P04 149 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 196 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-17 | 143 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.50E-10 | 143 | 200 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.8E-17 | 145 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-7 | 149 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAGFSRPNNS LLLKMPATLA SSHTPNLSSL LFYDQNHGQA VNANAAAMMV EDDASLQSSS 60 AVVDTSPQPQ GSAAAASPME RKRKPAEDSA TLSSAQSKED CKQQQESKSR RGKRPHNKEA 120 NTEEKSATED EATRGYIHVR ARRGQATDSH SLAERVRRER ISERMRMLQA LVPGCDKVTG 180 KALILDEIIN YVQSLQNQVE FLSMRIASMS PVLYGFGLDS DGLHDHAQVW NSKIIFLSAK 240 NTVNKLMFKC EL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.748 | 0.0 | embryo| meristem| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G882527 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G882527_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035377 | 0.0 | BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds. | |||
GenBank | KJ726862 | 0.0 | KJ726862.1 Zea mays clone pUT3403 bHLH transcription factor (bHLH173) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648030.1 | 1e-168 | uncharacterized protein LOC100193179 isoform X1 | ||||
TrEMBL | B4FE39 | 1e-166 | B4FE39_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM5G882527_P03 | 1e-167 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G882527_P04 |