PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G882527_P02 | ||||||||
Common Name | si683023f08 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 34128.1 Da PI: 6.5121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 149 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq GRMZM5G882527_P02 149 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 196 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.10E-11 | 143 | 200 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 143 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 145 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 149 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAGFSRPNNS LLLKMPATLA SSHTPNLSSL LFYDQNHGQA VNANAAAMMV EDDASLQSSS 60 AVVDTSPQPQ GSAAAASPME RKRKPAEDSA TLSSAQSKED CKQQQESKSR RGKRPHNKEA 120 NTEEKSATED EATRGYIHVR ARRGQATDSH SLAERVRRER ISERMRMLQA LVPGCDKVTG 180 KALILDEIIN YVQSLQNQVE FLSMRIASMS PVLYGFGLDS DGLHDHAQMG VMFQEALAMA 240 GPVLSQASPA APSEAIMDTT TPYSLHGHGQ GSISFSQDNG SSTYLMQHQQ AAGEPTRQQE 300 LLSQLVFNNM CSFQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.748 | 0.0 | embryo| meristem| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G882527 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G882527_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035377 | 0.0 | BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648030.1 | 0.0 | uncharacterized protein LOC100193179 isoform X1 | ||||
TrEMBL | B4FE39 | 0.0 | B4FE39_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM5G882527_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G882527_P02 |
Entrez Gene | 100193179 |