PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM5G874545_P01

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

GRAS

Protein Properties

Length: 342aa MW: 37832.3 Da PI: 6.5808

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM5G874545_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	181	8.3e-56	7	175	44	212
GRAS 44 yfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132 f eALa+r++r l+p ++ + ++++a+ l f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaL GRMZM5G874545_P01 7 KFGEALARRVYR--------LRPAPDG--SLLDAAFADLLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQAL 88 588999999999........4444443..34444444433445*********************************************** PP GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.......gEalaVnlvlqlhr 212 a Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +Lr + E++aVn+v++ GRMZM5G874545_P01 89 ALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLRPEGggdtddePEVIAVNSVVRAAP 175 **********************************************************555455555579******98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.78	1	231	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-53	7	175	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MRKDDDKFGE ALARRVYRLR PAPDGSLLDA AFADLLHAHF YESCPYLKFA HFTANQAILE 60 AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK 120 LAQFAHTIRV DFQYRGLVAA TLADLEPFML RPEGGGDTDD EPEVIAVNSV VRAAPAARAA 180 RVHSTRSWGT VRAGAAEDRD GWWSRRPTRT PAHFLDRFRE SLHYYSTMFD SPRGPPAQGS 240 GFRVPGGKRQ RWPGEEVVAF EDSTSTTVDR RGGGGGRCDA SRKGYCCSHR DCTLQDVEDP 300 TWHLADDEAL DSDRGGAFQD TIFFGSKTSS EEVGCQIHFC FL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MRKDDDKFGE ALARRVYRLR PAPDGSLLDA AFADLLHAHF YESCPYLKFA HFTANQAILE  60
AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK  120
LAQFAHTIRV DFQYRGLVAA TLADLEPFML RPEGGGDTDD EPEVIAVNSV VRAAPAARAA  180
RVHSTRSWGT VRAGAAEDRD GWWSRRPTRT PAHFLDRFRE SLHYYSTMFD SPRGPPAQGS  240
GFRVPGGKRQ RWPGEEVVAF EDSTSTTVDR RGGGGGRCDA SRKGYCCSHR DCTLQDVEDP  300
TWHLADDEAL DSDRGGAFQD TIFFGSKTSS EEVGCQIHFC FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-29	8	231	47	268	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.6402	0.0	ear\| endosperm\| meristem\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM5G874545

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM5G874545_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ903073	0.0	DQ903073.1 Zea mays dwarf plant9 (d9) mRNA, d9-B73 allele, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001296780.1	1e-121	DELLA protein DWARF8-like
Swissprot	Q9ST48	1e-117	DWRF8_MAIZE; DELLA protein DWARF8
TrEMBL	Q06F07	1e-120	Q06F07_MAIZE; Dwarf plant9 (Fragment)
STRING	GRMZM5G874545_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-68	GRAS family protein

Link Out ? help Back to Top
Phytozome	GRMZM5G874545_P01

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895]