PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G874163_P03
Common NameLOC100502387, ZEAMMB73_374158
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 683aa    MW: 74119.8 Da    PI: 7.0986
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G874163_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.38.4e-25128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   
  GRMZM5G874163_P03 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL-- 215
                        99****************************9876665..459************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+++v+r+
  GRMZM5G874163_P03 216 RGDDGELRLGVRRA 229
                        3489999***9986 PP
2Auxin_resp935e-31254334182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +a++++++svF++ YnPra++se++++++k++k+l+++v++G R+ ++  +ed+serr sG+vv +s++dp++Wp+SkWrsL
  GRMZM5G874163_P03 254 VADSLKNRSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERR-SGVVVRISEIDPMKWPGSKWRSL 334
                        57889*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-44114265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38126229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-22126228No hitNo description
PROSITE profilePS5086313.422128230IPR003340B3 DNA binding domain
PfamPF023621.1E-22128229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24128230IPR003340B3 DNA binding domain
PfamPF065074.5E-26255334IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MGIDLNMVDG EGHERRPPPV TCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA  60
ADLPPHVVCR VADVELCADA ATDEVCARLA LVAEGEAFGR NLGGGGVEGD DGMEDFDAER  120
KSGMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF  180
RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED  240
FNSDSTKRHS LTAVADSLKN RSVFHISYNP RATASEYIIP YAKFLKSLNH PVCIGARINF  300
QCHNEDVSER RSGVVVRISE IDPMKWPGSK WRSLLVRWED GAECNGQDRV SPWEIEIAGG  360
SVSVSHSLSA SSSKRTKLCP QGNLDVPAMW NGCTDSMETG KLPRVLQGQE LMSFRTCHVP  420
CAPQTAEAAK LQSSDASRFL SNAHGCALGG PTSRLAVHSS GFTYQCVGFN ESIGFSEVLQ  480
GQEISRAVPK FQGMMSEACS LKDRYGLHSY MRAPVAVNGL SATTQECSLA LSTPPGAQVP  540
SLYPGNVVNR TVVPQLGLAR KFGGGGTNGQ QSGPFDRPRE LWTRPQHETP DQMNLDQFET  600
RRPSVPVDAA KLGSGGGEVR KTSCRLFGFS LTEKILPADD DDVKEVSYET ECQNPRMLDL  660
FGYNCSTPSA ALPALCAAAP FGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-921935649388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.807460.0ear| embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G874163
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G874163_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879710.0BT087971.1 Zea mays full-length cDNA clone ZM_BFb0336E09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352475.10.0Auxin response factor 3
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLK7V4X60.0K7V4X6_MAIZE; Auxin response factor
STRINGGRMZM5G874163_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Representative plantOGRP1291845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-143ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]