PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G845366_P01
Common NameC3H27, LOC100381668
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 482aa    MW: 52092.5 Da    PI: 7.8735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G845366_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-074363526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C++f++ G C++Gd C +aHg
  GRMZM5G845366_P01 43 PCPDFRK-GVCRRGDMCEYAHG 63
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-53864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-54165IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-54363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3754365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-471101IPR000571Zinc finger, CCCH-type
SMARTSM00356377396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY  60
AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAA  120
MEMAAAMGLM PGSPSSVSAV MSPFTPPMSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR  180
LRTSLSARDM PADDYSLMPD FDSQLMNDLC YSRLGSSTGN HSARTKSLNP SNLDDLFSAE  240
LVSSPRYSNG DQGAMFSPSH KAAILNQFQQ QQQALLSPIN TGVYSPKAVD NKQLPSHPSL  300
LHASLGMPSP GRMSPRCVES GSPMNSHLAA ALAQREKQQQ TMRSLSSRDL GPSAARASAL  360
GSPLSTSWSK WGSPSGVPDW GVDGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE  420
KQVTTSESIN SVGPSPLMPP SMNNGGEGSG LNTQLDGRDQ AAVLGALLEQ MQLDQQIGSL  480
AT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.36010.0cell culture| meristem| ovary| pedicel| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G845366
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G845366_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619330.0BT061933.1 Zea mays full-length cDNA clone ZM_BFb0199C03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001343560.10.0uncharacterized LOC100381668
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1D6GK170.0A0A1D6GK17_MAIZE; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3L6EQD30.0A0A3L6EQD3_MAIZE; Zinc finger CCCH domain-containing protein 24
STRINGGRMZM5G845366_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-144CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]