PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G842019_P01
Common NameAY110023, C3H32
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 656aa    MW: 69821.4 Da    PI: 7.3338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G842019_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08282304426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C++f+r G C+ Gd+C F+Hg
  GRMZM5G842019_P01 282 VPCPNFRRPGGCPSGDSCEFSHG 304
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.13E-1472151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.0847397IPR002110Ankyrin repeat
PfamPF127966.2E-1073140IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-1673152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.66173148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1973103IPR002110Ankyrin repeat
CDDcd002041.36E-1375151No hitNo description
PROSITE profilePS5008812.743108143IPR002110Ankyrin repeat
SMARTSM002480.003108140IPR002110Ankyrin repeat
PROSITE profilePS5010313.995278306IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5279307IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6282305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4310343IPR000571Zinc finger, CCCH-type
SMARTSM0035621314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MGDLADLAGA GEAARSHLAA GGQRDRLAAL LELAAADDVA GFREALAGGG GEGDTAELAD  60
GVGMWYGRSK AYEPRTPLMV AATYGSVEVV SLLLALGCVD VNRRPGVDGA TPLHCAASGG  120
SRNAVAVVKL LLGAGADPVT PDSAGRLPAD VILSPPASPD ALGDLEMLLG RRRGLAVATS  180
VPSLSSSPPL SSSPDESNRS PSSRSSSLSP ITVDRAKKEY PVDPTLPDIK SRVYASDEFR  240
MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDSCE  300
FSHGVFESWL HPSQYRTRLC KEGAACARRI CFFAHDEDEL RHVPHNSGAG LLSPRASSSI  360
DMTAAAAALG LLPGSPTRHF VPPPLSPSAA NNGGGAAAHW LQGSRLRSSF NARDAQADDL  420
GSLLEWESQY LGALSLPQSS RSQPRLSTGL TIRPTAVAPS YLEEMYASDM AMSPRFTNDQ  480
GHSVFSPAHK SALLNKFHHQ QKGLLSPVNT NRMYSPRGLD PSIIHSPFGG MSPRSPRTME  540
LTSPLSVRVG VGAAVTPRDM LDQFSSLNKH QVPSVGSPRN LNASWGNIGT PKSKVDWGVD  600
DDELVRLRHP VQHGNTEDEP DVSWVQSLVN HAELNGKRGE MASMASPSIN KPDLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gmr_A1e-111915112142OR266 DE NOVO PROTEIN
4gmr_B1e-111915112142OR266 DE NOVO PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.845530.0endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G842019
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G842019_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145979.10.0uncharacterized protein LOC100279507
RefseqNP_001335879.10.0uncharacterized protein LOC100279507
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLB7ZYH40.0B7ZYH4_MAIZE; C3H transcription factor
STRINGGRMZM5G842019_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-145CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]