PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G801627_P01
Common NameZm.82267
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 394aa    MW: 42104.2 Da    PI: 7.9089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G801627_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-09117138426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C++f++ G Ck+Gd C FaHg
  GRMZM5G801627_P01 117 AACPDFRK-GGCKRGDACEFAHG 138
                        78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-5113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178114140IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-7117138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5119140IPR000571Zinc finger, CCCH-type
SMARTSM0035627148171IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.751148172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMMMMGERAH APPWQRSPAA SGVTDADDAS PYALLAALQH YLPSNEVAAY DEDDEEAALA  60
AATAAVDAYA CDEFRMYEFK VRRCSRGRNH DWTACPYAHP GEKARRRDPR RYHYSGAACP  120
DFRKGGCKRG DACEFAHGVF ECWLHPSRYR TQPCKDGTGC RRRVCFFAHT PDQLRVPPPR  180
QSSPRGAAAA ASPLAESYDG SPLRRQAFES YLTKSGIVSS PPPTSTLVSP PRSPPSESPP  240
MSPDAAAALR RGSWPGVGSP VNEVLASMRQ LRLGGGSPRS APSGGSFLGG GYPFGSPKSP  300
AGLYSLPSTP TRPSPVTVTT ASGATVLTVE RLNLGLIGDE EPVMERVESG RALREKVFER  360
LSKEAAVPSD TAASANVEGA APAPDVGWVS DLIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.822670.0ear| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G801627
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G801627_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671100.0BT067110.1 Zea mays full-length cDNA clone ZM_BFb0196G17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144558.20.0uncharacterized protein LOC100277562
SwissprotQ6L4N41e-175C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A3L6EJ150.0A0A3L6EJ15_MAIZE; Zinc finger CCCH domain-containing protein 35
TrEMBLC0PFP10.0C0PFP1_MAIZE; Zinc finger CCCH domain-containing protein 23
TrEMBLK0D9M50.0K0D9M5_MAIZE; C3H39 C3H type transcription factor (Fragment)
STRINGGRMZM5G801627_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]