PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G704330_P01
Common NameLOC103633687
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 614aa    MW: 66507.1 Da    PI: 5.6913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G704330_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26078.79.8e-25121091100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C++Ck lrr+C+ +C++ap f ae+   fa+v++++G  nv ++++ + p e+r+ a+++lv eA+ar rdPv G+v+ i+ lq+   +++
  GRMZM2G704330_P01  12 QCEVCKKLRRSCPLNCIFAPNFSAEE---FAAVNRVYGSGNVANMIRCVtPSEQRRVAAATLVAEARARERDPVFGCVSYIRILQEFNYNAR 100
                        6********************99876...*******************955666*********************************99999 PP

             DUF260  92 aelallkee 100
                        +++++++ee
  GRMZM2G704330_P01 101 KQVDEAREE 109
                        999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.28611110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2312107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEKNQGTGRR AQCEVCKKLR RSCPLNCIFA PNFSAEEFAA VNRVYGSGNV ANMIRCVTPS  60
EQRRVAAATL VAEARARERD PVFGCVSYIR ILQEFNYNAR KQVDEAREEI AREFGAAAAA  120
EPVDLAAAGP AVRLEARAQV DAALKDAREL DARMLDVRKG NDVILWRELQ QQQAAVKGKG  180
KGKRAMKGKE VDVKRRRHEP SLSEQTMQVV PQAAKPRNPG PPGFPDDHSR QQVAVAVAEA  240
ERTAPPDAPE GHGHGRQLHH QMSEPEAQQQ ASAADASAGQ HTGTGHPHHA GDAAAPDIPA  300
GPGHDSSTSV IRAMQEVQHA GATGEQDQHH VAQHAQNEHC VALGHGDPYG ISQDILQLQL  360
LLMGQCGAAP ATEQDVTAMM QQMAAAASGW QQQDHPAPQP QYAEMRDNTL GHGHGHPDGL  420
SSEEILQPQE LSMEQCDAAV EGTAPAEQDV MAMMQQMAAA ASGWQQQDHL APQPQYVEMR  480
DNTLGHGHGH PDGLSSEKIL QLQELLMGQC DAAEEGAAPT EQEVMVMMQQ MAAAAWPQQD  540
PAPQYAETDI TIGHGHPDMQ KLLDTTELAR NQLMTNNYVT TMVQQNSSSV LAPSSPRGRT  600
SPRPGLLPPR DWPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1981267131LOB family transfactor Ramosa2.1
5ly0_B3e-1981267131LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G704330
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G704330_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6HSN90.0A0A1D6HSN9_MAIZE; Uncharacterized protein
STRINGGRMZM2G704330_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.19e-14lateral organ boundaries-domain 16