PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G700011_P01 | ||||||||
Common Name | LOC100274293, ZEAMMB73_465215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14004.7 Da PI: 10.4209 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 6 | 50 | 5 | 46 |
-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 ++e+ +l++a + gg +W++Ia+ ++ gRt++++++ w++ GRMZM2G700011_P01 6 SPELSIRLARALISYAGGapesRWSLIANQLP-GRTGNDVRNCWNT 50 79999***************************.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.198 | 1 | 56 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.8E-7 | 6 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.25E-6 | 13 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 17 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-8 | 18 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MRPASSPELS IRLARALISY AGGAPESRWS LIANQLPGRT GNDVRNCWNT KLSKQLRQRG 60 IDPTAPSPTS CTSSPAPSPY GDDGAGEIID ATLESWTATR RRGWTSSSPS CWPTRPTTLA 120 PPPRWAGSWA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G700011 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G700011_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948299 | 0.0 | EU948299.1 Zea mays clone 372547 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658316.1 | 2e-86 | hypothetical protein | ||||
TrEMBL | B4G020 | 5e-79 | B4G020_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G700011_P02 | 8e-80 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 2e-11 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G700011_P01 |
Entrez Gene | 100274293 |